PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi003774
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YC
Protein Properties Length: 248aa    MW: 27897.6 Da    PI: 7.788
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50823014PU_refUnigeneView CDS
PUT-183a-Picea_sitchensis-2426PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC173.91.7e-54871901101
      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                ql++fw +q   +e+a+dfk h+lPlarikki+kadedvkmisaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+ rtdifdflvdivp
  Psi003774  87 QLQAFWGNQmreVEQAQDFKTHSLPLARIKKIMKADEDVKMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAIGRTDIFDFLVDIVP 186
                89******9777799************************************************************************************* PP

      NF-YC  98 rdel 101
                rde 
  Psi003774 187 RDEF 190
                *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.85E-3283181IPR009072Histone-fold
PfamPF008083.3E-21109172IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.4E-37110187IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
EIHANNPQVS EVHRTLRKMV NWAESEIRIE XEKSRQSVIR RIGYLESKDQ QQPTIPALPQ  60
VGYGTNPYIA PPIGGPPHPQ LASYHQQLQA FWGNQMREVE QAQDFKTHSL PLARIKKIMK  120
ADEDVKMISA EAPVVFAKAC EMFILELTLR SWIHTEENKR RTLQKNDIAA AIGRTDIFDF  180
LVDIVPRDEF KDEGLVIPRA AGAVPFMGPG DNVPSYYYVA QQAPNMAAYA PPTQQMRSKA  240
PAPPHGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B1e-4293187197NF-YC
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159165RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.86870.0needle| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775725.12e-71PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008775726.12e-71PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008775727.12e-71PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008775728.12e-71PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008775729.12e-71PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ8LCG74e-68NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLB2LSM21e-148B2LSM2_9SPER; HAP5B
TrEMBLA9NKR81e-148A9NKR8_PICSI; Putative uncharacterized protein
STRINGBra003334.1-P3e-68(Brassica rapa)
STRINGBGIOSGA007055-PA6e-68(Oryza sativa Indica Group)
STRINGLOC_Os02g07450.16e-68(Oryza sativa Japonica Group)
STRINGORGLA02G0049900.16e-68(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-69nuclear factor Y, subunit C2